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Creators/Authors contains: "Jensen, Alex_J"

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  1. ABSTRACT Crowd‐sourced biodiversity data, such as those housed in the iNaturalist platform, are increasingly used to monitor species distributions. Such data represent unstructured biodiversity surveys that are generally comprised of incidental observations and do not report variation in sampling effort. These discrepancies may yield data that is incongruent with data from structured surveys. To assess whether mammalian iNaturalist data are reflective of data from traditional structured surveys, we calculated and compared measures of mammalian species richness and species pool similarity using data from unstructured surveys (i.e., iNaturalist) and data from structured camera trap surveys and bat acoustic surveys. We found that data from structured and unstructured surveys generally document similar mammalian species richness, but the two survey types document different species pools. Human population density and proxies for species pool breadth were most strongly associated with discrepancies in datasets, with data being most similar in areas of high human population density and lower species richness. Our analyses revealed that dataset similarity varied across geography and community metric for most taxa, but that structured and unstructured surveys produced consistently unreconcilable datasets for bats. These findings suggest that unstructured datasets like iNaturalist may offer reliable data for some taxa and geographies, but that these data are not universally applicable to all research scenarios. 
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  2. ABSTRACT Accurately estimating species distributions is critical for tracking how biodiversity is shaped by global change. While some species are expanding their ranges, the importance of factors like climate change, habitat change, and human avoidance for explaining this expansion is not well understood. Here, we used observations of 94 North American mammals on iNaturalist to (1) identify errors of omission in the existing range maps; (2) differentiate between extra‐range populations that are likely products of natural expansions vs. introductions; and (3) test hypotheses about where natural range expansions occur. We found a substantial percentage of observations were outside both IUCN (16%) and Area of Habitat (36%) maps, suggesting that integrating contemporary citizen science data would improve existing range maps. We estimated that most observations outside IUCN ranges were natural expansions and 95% of species had at least one naturally expanding population. We also identified introductions for 36% of species, which were particularly extensive for several species. We show that natural range expansions are generally associated with a lighter human footprint and less habitat change and are not associated with warming temperatures. This suggests that habitat modifications by humans constrain the ability of species to expand their range to track a changing climate. We also found substantial variation in the directionality of effects from all factors across species, meaning that our species‐specific findings will be useful for conservation planning. Our study demonstrates that citizen science data can be useful for conservation by tracking how organisms are responding, or failing to respond, to global change. 
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  3. Abstract AimSynthesize literature on genetic structure within species to understand how geographic features and species traits influence past responses to climate change. LocationNorth America. Time PeriodWe synthesized phylogeographic studies from 1978 to 2023, which describe genetic lineages that diverged during the Pleistocene (≥11,700 years ago). Major Taxa StudiedMammals. MethodsWe conducted a literature review to map genetic breaks in species distributions, then tested a set of geographic hypotheses (e.g., mountains, rivers) to explain their position by comparing break locations to a grid within each species' sampled range using logistic regression. We then conducted a meta‐analysis using species‐specific model estimates to ask if life‐history traits explained variation in which barriers were most important in species' past response to climate change. ResultsOur findings reveal heterogeneity in both where North American mammal phylogeography has been studied and the density of genetic breaks across 229 species. We found relatively high concordance among carnivores, ungulates and lagomorphs, where breaks were associated with mountains, major water bodies and relatively even terrain. In contrast, we found high variability within rodents and shrews, and no evidence that intrinsic factors related to dispersal ability explained the importance of hypothesized barriers across all species. Main ConclusionsSouthern Mexico is a hotspot for genetic breaks that has yet to be integrated into the broader story of North American phylogeography. We show that mountains and major water bodies play particularly important roles as barriers, but substantial variation across species within orders suggests that there is more to the story besides shared climatic or phylogenetic histories. Thus, understanding the phylogeography of individual species will continue to be important given that our results suggest high variability in how species may respond to future global change. 
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  4. Abstract Site occupancy models (SOMs) are a common tool for studying the spatial ecology of wildlife. When observational data are collected using passive monitoring field methods, including camera traps or autonomous recorders, detections of animals may be temporally autocorrelated, leading to biased estimates and incorrectly quantified uncertainty. We presently lack clear guidance for understanding and mitigating the consequences of temporal autocorrelation when estimating occupancy models with camera trap data.We use simulations to explore when and how autocorrelation gives rise to biased or overconfident estimates of occupancy. We explore the impact of sampling design and biological conditions on model performance in the presence of autocorrelation, investigate the usefulness of several techniques for identifying and mitigating bias and compare performance of the SOM to a model that explicitly estimates autocorrelation. We also conduct a case study using detections of 22 North American mammals.We show that a join count goodness‐of‐fit test previously proposed for identifying clustered detections is effective for detecting autocorrelation across a range of conditions. We find that strong bias occurs in the estimated occupancy intercept when survey durations are short and detection rates are low. We provide a reference table for assessing the degree of bias to be expected under all conditions. We further find that discretizing data with larger windows decreases the magnitude of bias introduced by autocorrelation. In our case study, we find that detections of most species are autocorrelated and demonstrate how larger detection windows might mitigate the resulting bias.Our findings suggest that autocorrelation is likely widespread in camera trap data and that many previous studies of occupancy based on camera trap data may have systematically underestimated occupancy probabilities. Moving forward, we recommend that ecologists estimating occupancy from camera trap data use the join count goodness‐of‐fit test to determine whether autocorrelation is present in their data. If it is, SOMs should use large detection windows to mitigate bias and more accurately quantify uncertainty in occupancy model parameters. Ecologists should not use gaps between detection periods, which are ineffective at mitigating temporal structure in data and discard useful data. 
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